The conditions that are expected are an "upstream control" not a "downstream control" event. The level of the water in these areas is mostly controlled tide. Since there is water in the channels already, the excess capacity is that area of conveyance ABOVE the current water levels. (If a glass is half full then the excess capacity of the glass is the top half of the glass). Since the water level upstream is higher already, the increased conveyance would happen at a higher level. So anything that is at or below the current channel bottom levels would have little affect on the conveyance. (making the channel deeper is not the answer making the channel wider is, make a half full glass wider at the top).
Also since the water surface, is higher the slope of the water surface is higher causing an increase in velocity. If there is any debris in the river I would suspect that it would soon be flushed out. Not to say that it would not be replaced by more debris from upstream.
The thing that controls water flow in an open channel is not necessarily the slope of the bottom of the channel but the slope of the top of the water. (more specifically the slope of the Hydraulic Grade Line HGL. don't ask me to explain that in a message board as it is a 400 level course in Civil Engineering schools).
Bottom line, once the water gets that close to the Gulf (water surface elevation of zero) the water will seek that level through the line of least resistance (water is lazy) which is tide dependent not channel bottom dependent at this location.
That's the best I can do maybe somebody else can make a stab at a better explaination.